VIB PTM Viewer VIB
PTM Viewer

Resources

First and foremost we thank all the plant community mapping all these PTMs and enabling Plant PTM Viewer

Do not hesitate to contribute your own PTM data under the Submit section!

Species Annotation Databases

PLAZA
PLAZA - Comparative Plant Genomics
https://www.bioinformatics.psb.ugent.be/plaza/
PMID: 29069403
Araport
Arabidopsis thaliana: Araport11
https://www.araport.org/
PMID: 27862469
JGI
Chlamydomonas reinhardtii: JGIv5.5
https://phytozome.jgi.doe.gov
PMID: 17932292

Oryza sativa ssp. japonica: JGIv7
https://phytozome.jgi.doe.gov
PMID: 17145706
MaizeGDB
Zea mays: AGPv4
https://www.maizegdb.org/
PMID: 28605751
Triticum aestivum: TGACv1
PMID: 28420692

PTM Sites and Protein Annotation

PhosPhat
PhosPhat4.0: Arabidopsis
Phosphorylation Database

https://www.phosphat.uni-hohenheim.de/
PMID: 17984086
UniProtKB
UniProtKB: Centralized Protein Resource
https://www.uniprot.org/
PMID: 14681372
InterPro
InterPro: Protein Domain Database
https://www.ebi.ac.uk/interpro/
PMID: 11159333

PRIDE
PRIDE archive
https://www.ebi.ac.uk/pride/
PMID: 26527722
"The Plant PTM Viewer, a central resource for exploring plant protein modifications"
Willems P, Horne A, Van Parys T, Goormachtig S, De Smet I, Botzki A, Van Breusegem F, Gevaert K. ; Plant J. 2019 Aug;99(4):752-762.
© VIB Bioinformatics Core 2018