Open search Plant PTM Viewer 2.0 - Lipoylation
Lipoylation in Arabidopsis thaliana
2 modifications in 2 peptides, found in 2 proteins
Experiment Details
Exp 164d
| Experimental Setup | |
| Tissue | Tissue atlas (Mergner et al., 2020) |
|---|---|
| Condition | Control conditions |
| MS Instrument | Q Exactive HF |
| MS/MS Search Parameters | |
| Protein Database | Arabidopsis thaliana |
| Decoy Strategy | Target-decoy |
| FDR Threshold | 0.01 |
| Search Algorithm(s) | MSFragger version 3.3 |
| Precursor Mass Tolerance | Open search [-150; 500 Da] |
| Protease | Trypsin |
| Fixed Modifications | Carbamidomethylation (C) |
| Variable Modifications | Oxidation (M) |
| Other Information | |
| Comments | Mass shift of 188.033 Da localized to Lys of the glycine decarboxylase complex proteins GDH1 and GDH2 – corresponding to the mass of the lipoyl cofactor known to bind these Lys. |