PTM Viewer PTM Viewer

SPINDLY O-fucosylation

O-Fucosylation in Arabidopsis thaliana

403 modifications in 321 peptides, found in 420 proteins

Experiment Details

Exp 162


Experimental Setup
Tissue5-week-old flowers
ConditionCol and spy mutant, control
PTM EnrichmentFucose-binding Aleuria aurantia lectin (AAL) pulldown
MS InstrumentQ Exactive HF (HCD) and Orbitrap Eclipse (HCD/EThcD)
MS/MS Search Parameters
Protein DatabaseTAIR 2010 (35,386 entries)
Decoy StrategyRandomized proteins
FDR Threshold0.01
Search Algorithm(s)Protein Prospector
Precursor Mass Tolerance5 ppm
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsOxidation (M)
Pyro-Glu (N-term Q)
O-fucosylation (ST)
Acetylation (Protein N-term)
Labels15N Metabolic labeling
Other Information
CommentsDataset S5, only Fucosyl modifications localized to a single amino acid are included.


Publication Information

Bi et al. (2023)

PubMed ID: 36739885

ProteomeXchange: PXD038490, PXD038491

Abstract

Plant Cell. 2023 Apr 20;35(5):1318-1333. doi: 10.1093/plcell/koad023.

SPINDLY mediates O-fucosylation of hundreds of proteins and sugar-dependent 
growth in Arabidopsis.

Bi Y(1), Shrestha R(1), Zhang Z(1), Hsu CC(1)(2), Reyes AV(1)(3), Karunadasa 
S(1), Baker PR(4), Maynard JC(4), Liu Y(5), Hakimi A(5), Lopez-Ferrer D(5), 
Hassan T(6), Chalkley RJ(4), Xu SL(1)(3), Wang ZY(1).

Author information:
(1)Department of Plant Biology, Carnegie Institution for Science, Stanford, 
California 94305, USA.
(2)Institute of Plant and Microbial Biology, Academia Sinica, Taipei 115, 
Taiwan.
(3)Carnegie Mass Spectrometry Facility, Carnegie Institution for Science, 
Stanford, California 94305, USA.
(4)Department of Pharmaceutical Chemistry, University of California at San 
Francisco, San Francisco, California 94143, USA.
(5)ThermoFisher Scientific, San Jose, California 95134, USA.
(6)ThermoFisher Scientific, Somerset, New Jersey 08873, USA.

Comment in
    Plant Cell. 2023 Apr 20;35(5):1285-1287.

The recent discovery of SPINDLY (SPY)-catalyzed protein O-fucosylation revealed 
a novel mechanism for regulating nucleocytoplasmic protein functions in plants. 
Genetic evidence indicates the important roles of SPY in diverse developmental 
and physiological processes. However, the upstream signal controlling SPY 
activity and the downstream substrate proteins O-fucosylated by SPY remain 
largely unknown. Here, we demonstrated that SPY mediates sugar-dependent growth 
in Arabidopsis (Arabidopsis thaliana). We further identified hundreds of 
O-fucosylated proteins using lectin affinity chromatography followed by mass 
spectrometry. All the O-fucosylation events quantified in our proteomic analyses 
were undetectable or dramatically decreased in the spy mutants, and thus likely 
catalyzed by SPY. The O-fucosylome includes mostly nuclear and cytosolic 
proteins. Many O-fucosylated proteins function in essential cellular processes, 
phytohormone signaling, and developmental programs, consistent with the genetic 
functions of SPY. The O-fucosylome also includes many proteins modified by 
O-linked N-acetylglucosamine (O-GlcNAc) and by phosphorylation downstream of the 
target of rapamycin (TOR) kinase, revealing the convergence of these nutrient 
signaling pathways on key regulatory functions such as 
post-transcriptional/translational regulation and phytohormone responses. Our 
study identified numerous targets of SPY/O-fucosylation and potential nodes of 
crosstalk among sugar/nutrient signaling pathways, enabling future dissection of 
the signaling network that mediates sugar regulation of plant growth and 
development.

© The Author(s) 2023. Published by Oxford University Press on behalf of American 
Society of Plant Biologists.

DOI: 10.1093/plcell/koad023
PMCID: PMC10118272
PMID: 36739885 [Indexed for MEDLINE]

Conflict of interest statement: Conflict of interest statement. None declared.