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Touch-induced phosphorylation: 40s touch vs untouc

Phosphorylation in Arabidopsis thaliana

746 modifications in 705 peptides, found in 1252 proteins

Experiment Details

Exp 136


Experimental Setup
TissueThree-week-old plants
Condition40 s cotton-swab touching
PTM EnrichmentTiO2/Fe3+ -IMAC p
MS InstrumentLTQ Orbitrap XL and Q Exactive
MS/MS Search Parameters
Protein DatabaseTAIR10
Decoy StrategyReverse decoy
FDR Threshold1% FDR
Search Algorithm(s)MASCOT (version 2.3)
Identification ScoreMASCOT score
ProteaseTrypsin
Fixed ModificationsCarbamidomethylation (C)
Variable ModificationsPhosphorylation (STY)
Oxidation (M)
Labels14N/15N SILAC
Other Information
CommentsTable S2 and S3. Significance of ratio were adjusted p-values.


Publication Information

Wang et al., 2018

PubMed ID: 30291188

ProteomeXchange: PXD006181

Abstract

Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):E10265-E10274. doi: 
10.1073/pnas.1814006115. Epub 2018 Oct 5.

Quantitative and functional posttranslational modification proteomics reveals 
that TREPH1 plays a role in plant touch-delayed bolting.

Wang K(1)(2)(3), Yang Z(1)(2)(3)(4), Qing D(1)(2)(3), Ren F(1)(2)(3), Liu 
S(1)(2)(3), Zheng Q(1)(2)(3)(5), Liu J(6), Zhang W(6), Dai C(5), Wu M(1)(2)(3), 
Chehab EW(7), Braam J(7), Li N(8)(2)(3)(4).

Author information:
(1)Division of Life Science, The Hong Kong University of Science and Technology, 
Hong Kong SAR, China.
(2)Energy Institute, The Hong Kong University of Science and Technology, Hong 
Kong SAR, China.
(3)Institute for the Environment, The Hong Kong University of Science and 
Technology, Hong Kong SAR, China.
(4)HKUST Shenzhen Research Institute, 518057 Shenzhen, China.
(5)Proteomics Center, College of Resources and Environmental Sciences, Nanjing 
Agricultural University, 210095 Nanjing, China.
(6)ASPEC Technologies Limited, 100101 Beijing, China.
(7)Department of BioSciences, Rice University, Houston, TX 77005.
(8)Division of Life Science, The Hong Kong University of Science and Technology, 
Hong Kong SAR, China; boningli@ust.hk.

Comment in
    Nat Plants. 2018 Nov;4(11):856.

Environmental mechanical forces, such as wind and touch, trigger gene-expression 
regulation and developmental changes, called "thigmomorphogenesis," in plants, 
demonstrating the ability of plants to perceive such stimuli. In Arabidopsis, a 
major thigmomorphogenetic response is delayed bolting, i.e., emergence of the 
flowering stem. The signaling components responsible for mechanotransduction of 
the touch response are largely unknown. Here, we performed a high-throughput 
SILIA (stable isotope labeling in Arabidopsis)-based quantitative 
phosphoproteomics analysis to profile changes in protein phosphorylation 
resulting from 40 seconds of force stimulation in Arabidopsis thaliana Of the 24 
touch-responsive phosphopeptides identified, many were derived from kinases, 
phosphatases, cytoskeleton proteins, membrane proteins, and ion transporters. In 
addition, the previously uncharacterized protein TOUCH-REGULATED PHOSPHOPROTEIN1 
(TREPH1) became rapidly phosphorylated in touch-stimulated plants, as confirmed 
by immunoblots. TREPH1 fractionates as a soluble protein and is shown to be 
required for the touch-induced delay of bolting and gene-expression changes. 
Furthermore, a nonphosphorylatable site-specific isoform of TREPH1 (S625A) 
failed to restore touch-induced flowering delay of treph1-1, indicating the 
necessity of S625 for TREPH1 function and providing evidence consistent with the 
possible functional relevance of the touch-regulated TREPH1 phosphorylation. 
Taken together, these findings identify a phosphoprotein player in Arabidopsis 
thigmomorphogenesis regulation and provide evidence that TREPH1 and its 
touch-induced phosphorylation may play a role in touch-induced bolting delay, a 
major component of thigmomorphogenesis.

DOI: 10.1073/pnas.1814006115
PMCID: PMC6205429
PMID: 30291188 [Indexed for MEDLINE]

Conflict of interest statement: The authors declare no conflict of interest.