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UDP-GlcNAc transporter glycopeptide analysis

N-glycosylation in Arabidopsis thaliana

762 modifications in 750 peptides, found in 724 proteins

Experiment Details

Exp 135


Experimental Setup
Tissue3-Week-old seedlings wild-type, ugnt1-1/2, rock1-2/4 or cgl1-T/cgl1-3
ConditionControl
PTM EnrichmentHILIC SPE (The Nest Group)
MS InstrumentOrbitrap Fusion Lumos
MS/MS Search Parameters
Protein DatabaseTAIR10
Decoy StrategyReverse decoy
FDR Threshold1% FDR
Search Algorithm(s)Byonic (version 2.6)
Precursor Mass Tolerance5 ppm
ProteaseTrypsin
Fixed ModificationsCarbamidomethylation (C)
Variable ModificationsOxidation (M)
Glycan modification database
Other Information
CommentsDataset 1, all tabsheets.


Publication Information

Ebert et al., 2018

PubMed ID: 30224661

ProteomeXchange: PXD006635

Abstract

Nat Plants. 2018 Oct;4(10):792-801. doi: 10.1038/s41477-018-0235-5. Epub 2018 
Sep 17.

A Golgi UDP-GlcNAc transporter delivers substrates for N-linked glycans and 
sphingolipids.

Ebert B(1), Rautengarten C(1), McFarlane HE(1), Rupasinghe T(2), Zeng W(1)(3), 
Ford K(1)(3), Scheller HV(4)(5), Bacic A(1)(3), Roessner U(2), Persson S(1), 
Heazlewood JL(6).

Author information:
(1)School of Biosciences, University of Melbourne, Melbourne, Victoria, 
Australia.
(2)Metabolomics Australia, School of Biosciences, University of Melbourne, 
Melbourne, Victoria, Australia.
(3)ARC Centre of Excellence in Plant Cell Walls, School of Biosciences, 
University of Melbourne, Melbourne, Victoria, Australia.
(4)Joint BioEnergy Institute and Environmental Genomics and Systems Biology 
Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
(5)Department of Plant and Microbial Biology, University of California, 
Berkeley, CA, USA.
(6)School of Biosciences, University of Melbourne, Melbourne, Victoria, 
Australia. jheazlewood@unimelb.edu.au.

Glycosylation requires activated glycosyl donors in the form of nucleotide 
sugars to drive processes such as post-translational protein modifications and 
glycolipid and polysaccharide biosynthesis. Most of these reactions occur in the 
Golgi, requiring cytosolic-derived nucleotide sugars, which need to be actively 
transferred into the Golgi lumen by nucleotide sugar transporters. We identified 
a Golgi-localized nucleotide sugar transporter from Arabidopsis thaliana with 
affinity for UDP-N-acetyl-D-glucosamine (UDP-GlcNAc) and assigned it UDP-GlcNAc 
transporter 1 (UGNT1). Profiles of N-glycopeptides revealed that plants carrying 
the ugnt1 loss-of-function allele are virtually devoid of complex and hybrid 
N-glycans. Instead, the N-glycopeptide population from these alleles exhibited 
high-mannose structures, representing structures prior to the addition of the 
first GlcNAc in the Golgi. Concomitantly, sphingolipid profiling revealed that 
the biosynthesis of GlcNAc-containing glycosyl inositol phosphorylceramides 
(GIPCs) is also reliant on this transporter. By contrast, plants carrying the 
loss-of-function alleles affecting ROCK1, which has been reported to transport 
UDP-GlcNAc and UDP-N-acetylgalactosamine, exhibit no changes in N-glycan or GIPC 
profiles. Our findings reveal that plants contain a single UDP-GlcNAc 
transporter that delivers an essential substrate for the maturation of N-glycans 
and the GIPC class of sphingolipids.

DOI: 10.1038/s41477-018-0235-5
PMID: 30224661 [Indexed for MEDLINE]