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Redox kickstart of mitochondria

Reversible Cysteine Oxidation in Arabidopsis thaliana

320 modifications in 320 peptides, found in 400 proteins

Experiment Details

Exp 112


Experimental Setup
TissueMitochondria
ConditionUntreated or 25 min 10 mM citrate
PTM EnrichmentImmuno-enrichment of TMT-labelled Cys peptides
MS InstrumentOrbitrap Velos Pro
MS/MS Search Parameters
Protein DatabaseTAIR10 + roGFP2-Grx1 protein
Decoy StrategyReverse decoy database
FDR ThresholdFDR ≤ 1%
Search Algorithm(s)MaxQuant (version 1.5.5.1)
Precursor Mass Tolerance20 ppm
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsOxidation (M)
LabelsIodoTMT
Other Information
CommentsSupplemental Table 1. Only included peptides identified in all 3 replicates with a single cysteine (no ambiguity on oxidized Cys site) that showed significant differential oxidation (FDR < 2%). The log2 ratio of %Ox citrate / %Ox control was displayed here.


Publication Information

Nietzel et al., 2019

PubMed ID: 31871212

No external accession available

Abstract

Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):741-751. doi: 
10.1073/pnas.1910501117. Epub 2019 Dec 23.

Redox-mediated kick-start of mitochondrial energy metabolism drives 
resource-efficient seed germination.

Nietzel T(1), Mostertz J(2), Ruberti C(1), Née G(1), Fuchs P(1)(3), Wagner 
S(1)(4), Moseler A(3)(5), Müller-Schüssele SJ(3), Benamar A(6), Poschet G(7), 
Büttner M(7), Møller IM(8), Lillig CH(9), Macherel D(6), Wirtz M(7), Hell R(7), 
Finkemeier I(1), Meyer AJ(3), Hochgräfe F(2), Schwarzländer M(10).

Author information:
(1)Institute of Plant Biology and Biotechnology, University of Münster, D-48143 
Münster, Germany.
(2)Competence Center Functional Genomics, University of Greifswald, D-17489 
Greifswald, Germany.
(3)Institute of Crop Science and Resource Conservation, University of Bonn, 
D-53113 Bonn, Germany.
(4)Max Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany.
(5)Faculté des Sciences et Technologies, UMR 1136 Interactions 
Arbres/Microorganismes, Université de Lorraine, F-54506 Vandœuvre-lès-Nancy, 
France.
(6)Institut de Recherche en Horticulture et Semences, Université d'Angers, UMR 
1345, F-49071 Beaucouzé Cedex, France.
(7)Centre for Organismal Studies Heidelberg, Heidelberg University, D-69120 
Heidelberg, Germany.
(8)Department of Molecular Biology and Genetics, Aarhus University, DK-4200 
Slagelse, Denmark.
(9)Institute for Medical Biochemistry and Molecular Biology, University Medicine 
Greifswald, D-17489 Greifswald, Germany.
(10)Institute of Plant Biology and Biotechnology, University of Münster, D-48143 
Münster, Germany; markus.schwarzlander@uni-muenster.de.

Seeds preserve a far developed plant embryo in a quiescent state. Seed 
metabolism relies on stored resources and is reactivated to drive germination 
when the external conditions are favorable. Since the switchover from quiescence 
to reactivation provides a remarkable case of a cell physiological transition we 
investigated the earliest events in energy and redox metabolism of Arabidopsis 
seeds at imbibition. By developing fluorescent protein biosensing in intact 
seeds, we observed ATP accumulation and oxygen uptake within minutes, indicating 
rapid activation of mitochondrial respiration, which coincided with a sharp 
transition from an oxidizing to a more reducing thiol redox environment in the 
mitochondrial matrix. To identify individual operational protein thiol switches, 
we captured the fast release of metabolic quiescence in organello and devised 
quantitative iodoacetyl tandem mass tag (iodoTMT)-based thiol redox proteomics. 
The redox state across all Cys peptides was shifted toward reduction from 27.1% 
down to 13.0% oxidized thiol. A large number of Cys peptides (412) were redox 
switched, representing central pathways of mitochondrial energy metabolism, 
including the respiratory chain and each enzymatic step of the tricarboxylic 
acid (TCA) cycle. Active site Cys peptides of glutathione reductase 2, 
NADPH-thioredoxin reductase a/b, and thioredoxin-o1 showed the strongest 
responses. Germination of seeds lacking those redox proteins was associated with 
markedly enhanced respiration and deregulated TCA cycle dynamics suggesting 
decreased resource efficiency of energy metabolism. Germination in aged seeds 
was strongly impaired. We identify a global operation of thiol redox switches 
that is required for optimal usage of energy stores by the mitochondria to drive 
efficient germination.

DOI: 10.1073/pnas.1910501117
PMCID: PMC6955286
PMID: 31871212 [Indexed for MEDLINE]

Conflict of interest statement: The authors declare no competing interest.