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atm-3 X-ray callus - FC atm vs. atm Xray

Phosphorylation in Arabidopsis thaliana

2183 modifications in 1744 peptides, found in 2509 proteins

Experiment Details

Exp 111d


Experimental Setup
Tissuecallus
ConditionCol-0 100 Gy Xray 1Gy/min
PTM EnrichmentGlygen Ti-IMAC
MS InstrumentOrbitrap Elite
MS/MS Search Parameters
Protein DatabaseUniProt (ARATH, 2013-05)
Decoy StrategyReverse decoy database
FDR ThresholdPeptide 5%
Search Algorithm(s)Mascot Daemon (version 2.2.2)
Precursor Mass Tolerance5 ppm
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsOxidation (M)
Phosphorylation (STY)
Other Information
CommentsQuantification by Progenesis (v4.1, Nonlinear Dynamics), FDR calculated for fold change atm vs atm Xray


Publication Information

Waterworth et al., 2019

PubMed ID: 31410901

ProteomeXchange: PXD007100

Abstract

Plant J. 2019 Dec;100(5):1007-1021. doi: 10.1111/tpj.14495. Epub 2019 Sep 10.

Phosphoproteomic analysis reveals plant DNA damage signalling pathways with a 
functional role for histone H2AX phosphorylation in plant growth under genotoxic 
stress.

Waterworth WM(1), Wilson M(1), Wang D(2), Nuhse T(3), Warward S(3), Selley J(3), 
West CE(1).

Author information:
(1)Centre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds, LS2 
9JT, UK.
(2)Leeds Omics, University of Leeds, Leeds, LS2 9JT, UK.
(3)Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, 
M13 9PT, UK.

DNA damage responses are crucial for plant growth under genotoxic stress. 
Accumulating evidence indicates that DNA damage responses differ between plant 
cell types. Here, quantitative shotgun phosphoproteomics provided 
high-throughput analysis of the DNA damage response network in callus cells. MS 
analysis revealed a wide network of highly dynamic changes in the phosphoprotein 
profile of genotoxin-treated cells, largely mediated by the ATAXIA 
TELANGIECTASIA MUTATED (ATM) protein kinase, representing candidate factors that 
modulate plant growth, development and DNA repair. A C-terminal dual serine 
target motif unique to H2AX in the plant lineage showed 171-fold phosphorylation 
that was absent in atm mutant lines. The physiological significance of 
post-translational DNA damage signalling to plant growth and survival was 
demonstrated using reverse genetics and complementation studies of h2ax mutants, 
establishing the functional role of ATM-mediated histone modification in plant 
growth under genotoxic stress. Our findings demonstrate the complexity and 
functional significance of post-translational DNA damage signalling responses in 
plants and establish the requirement of H2AX phosphorylation for plant survival 
under genotoxic stress.

© 2019 The Authors. The Plant Journal published by Society for Experimental 
Biology and John Wiley & Sons Ltd.

DOI: 10.1111/tpj.14495
PMCID: PMC6900162
PMID: 31410901 [Indexed for MEDLINE]

Conflict of interest statement: The authors have no conflict of interest to 
declare.