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Phosphorylation tonoplast membrane fraction

Phosphorylation in Arabidopsis thaliana

143 modifications in 122 peptides, found in 234 proteins

Experiment Details

Exp 107


Experimental Setup
TissueLeaf, low density membrane fraction (tonopast enriched)
ConditionControl
PTM EnrichmentGa3+
MS InstrumentLTQ
MS/MS Search Parameters
Protein DatabaseTAIR6 + contaminants (28,954 sequences)
Decoy StrategyReverse decoy database
FDR ThresholdFDR estimated <1%
Search Algorithm(s)MASCOT version 2.1, SEQUEST
Precursor Mass Tolerance2 Da
Identification ScoreMASCOT Score
ProteaseTrypsin
Variable ModificationsOxidation (M)
Phosphorylation (STY)
Other Information
CommentsPhosphat 4.0 - Defined sites (pS/T/Y)


Publication Information

Whiteman et al., 2008

PubMed ID: 18686298

No external accession available

Abstract

Proteomics. 2008 Sep;8(17):3536-47. doi: 10.1002/pmic.200701104.

Identification of novel proteins and phosphorylation sites in a tonoplast 
enriched membrane fraction of Arabidopsis thaliana.

Whiteman SA(1), Serazetdinova L, Jones AM, Sanders D, Rathjen J, Peck SC, 
Maathuis FJ.

Author information:
(1)Department of Biology Area 9, University of York, York, UK.

Plant vacuoles play essential roles in many physiological processes, 
particularly in mineral nutrition, turgor provision and cellular signalling. The 
vacuolar membrane, the tonoplast, contains many membrane transporters that are 
critical in the execution of these processes. However, although increasing 
knowledge is available about the identity of proteins involved in these 
processes very little is known about the regulation of tonoplast transporters. 
By studying the phosphoproteome of tonoplast-enriched membranes, we identified 
66 phosphorylation sites on 58 membrane proteins. Amongst these, 31 sites were 
identified in 28 membrane transporters of various families including tonoplast 
anion transporters of the CLC family, potassium transporters of the KUP family, 
tonoplast sugar transporters and ABC transporters. In a number of cases, the 
detected sites were well conserved across isoforms of one family pointing to 
common mechanisms of regulation. In other cases, isoform-unique sites were 
present, suggesting regulatory mechanisms tailored to the function of individual 
proteins. These results provide the basis for future studies to elucidate the 
mechanistic regulation of tonoplast membrane transporters.

DOI: 10.1002/pmic.200701104
PMID: 18686298 [Indexed for MEDLINE]