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Site-specific nitrosomeproteomic id - gsnor1-3

S-nitrosylation in Arabidopsis thaliana

830 modifications in 828 peptides, found in 1403 proteins

Experiment Details

Exp 90b


Experimental Setup
TissueTwo-week old seedlings, gsnor1-3
ConditionControl
PTM EnrichmentBiotin switch
MS InstrumentLTQ Orbitrap Elite
MS/MS Search Parameters
Protein DatabaseArabidopsis UniProtKB proteome
Decoy StrategyReverse decoy database
FDR Threshold0.01
Search Algorithm(s)SEQUEST
Precursor Mass Tolerance0.5 Da
Identification ScoreXCorr
ProteaseTrypsin
Variable ModificationsBiotinylation (C)
Oxidation (M)
Carbamidomethyl (C)
Other Information
CommentsSearch results available PeptideAtlas acession PASS00638, cross-checked for inclusion in Supplemental Table S5. XCorr required to be > 2


Publication Information

Hu et al., 2015

PubMed ID: 25699590

No external accession available

Abstract

Plant Physiol. 2015 Apr;167(4):1731-46. doi: 10.1104/pp.15.00026. Epub 2015 Feb 
19.

Site-specific nitrosoproteomic identification of endogenously S-nitrosylated 
proteins in Arabidopsis.

Hu J(1), Huang X(1), Chen L(1), Sun X(1), Lu C(1), Zhang L(1), Wang Y(1), Zuo 
J(2).

Author information:
(1)State Key Laboratory of Plant Genomics and National Plant Gene Research 
Center (J.H., L.C., J.Z.), and State Key Laboratory of Molecular Developmental 
Biology (X.H., Y.W.), Institute of Genetics and Developmental Biology, Chinese 
Academy of Sciences, Beijing 100101, China;Graduate University of Chinese 
Academy of Sciences, Beijing 100049, China (J.H., L.C.); andInstitute of Botany, 
Chinese Academy of Sciences, Beijing 100093, China (X.S., C.L., L.Z.).
(2)State Key Laboratory of Plant Genomics and National Plant Gene Research 
Center (J.H., L.C., J.Z.), and State Key Laboratory of Molecular Developmental 
Biology (X.H., Y.W.), Institute of Genetics and Developmental Biology, Chinese 
Academy of Sciences, Beijing 100101, China;Graduate University of Chinese 
Academy of Sciences, Beijing 100049, China (J.H., L.C.); andInstitute of Botany, 
Chinese Academy of Sciences, Beijing 100093, China (X.S., C.L., L.Z.) 
jrzuo@genetics.ac.cn.

Nitric oxide (NO) regulates multiple developmental events and stress responses 
in plants. A major biologically active species of NO is S-nitrosoglutathione 
(GSNO), which is irreversibly degraded by GSNO reductase (GSNOR). The major 
physiological effect of NO is protein S-nitrosylation, a redox-based 
posttranslational modification mechanism by covalently linking an NO molecule to 
a cysteine thiol. However, little is known about the mechanisms of 
S-nitrosylation-regulated signaling, partly due to limited S-nitrosylated 
proteins being identified. In this study, we identified 1,195 endogenously 
S-nitrosylated peptides in 926 proteins from the Arabidopsis (Arabidopsis 
thaliana) by a site-specific nitrosoproteomic approach, which, to date, is the 
largest data set of S-nitrosylated proteins among all organisms. Consensus 
sequence analysis of these peptides identified several motifs that contain 
acidic, but not basic, amino acid residues flanking the S-nitrosylated cysteine 
residues. These S-nitrosylated proteins are involved in a wide range of 
biological processes and are significantly enriched in chlorophyll metabolism, 
photosynthesis, carbohydrate metabolism, and stress responses. Consistently, the 
gsnor1-3 mutant shows the decreased chlorophyll content and altered 
photosynthetic properties, suggesting that S-nitrosylation is an important 
regulatory mechanism in these processes. These results have provided valuable 
resources and new clues to the studies on S-nitrosylation-regulated signaling in 
plants.

© 2015 American Society of Plant Biologists. All Rights Reserved.

DOI: 10.1104/pp.15.00026
PMCID: PMC4378176
PMID: 25699590 [Indexed for MEDLINE]