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Tic56 chloroplast import - tic56-1

N-terminal Acetylation, N-terminus Proteolysis in Arabidopsis thaliana

269 modifications in 237 peptides, found in 272 proteins

Experiment Details

Exp 89c


Experimental Setup
TissueSeedlings, tic56-1
ConditionControl
PTM EnrichmentTAILS
MS InstrumentLTQ Orbitrap Velos
MS/MS Search Parameters
Protein DatabaseTAIR10
Decoy StrategyReverse decoy database
FDR Threshold1% (strict FDR)
Search Algorithm(s)SEQUEST, MaxQuant
Precursor Mass Tolerance7 ppm
Identification ScoreXCorr
ProteasesemiArgC
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsAcetylation (Peptide N-term)
Oxidation (M)
Dimethylation (K)
Dimethylation (Peptide N-term)
Other Information
Comments Supplemental Table S2, Proteome Discoverer results with high confidence (strict FDR). N-term acetylation is considered as a N-terminus proteolysis modification site.


Publication Information

Köhler et al., 2015

PubMed ID: 25588737

ProteomeXchange: PXD000660

Abstract

Plant Physiol. 2015 Mar;167(3):972-90. doi: 10.1104/pp.114.255562.

Characterization of chloroplast protein import without Tic56, a component of the 
1-megadalton translocon at the inner envelope membrane of chloroplasts.

Köhler D, Montandon C, Hause G, Majovsky P, Kessler F, Baginsky S, Agne B.

We report on the characterization of Tic56, a unique component of the recently 
identified 1-MD translocon at the inner envelope membrane of chloroplasts (TIC) 
in Arabidopsis (Arabidopsis thaliana) comprising Tic20, Tic100, and Tic214. We 
isolated Tic56 by copurification with Tandem Affinity Purification-tagged Toc159 
in the absence of precursor protein, indicating spontaneous and 
translocation-independent formation of the translocon at the outer envelope 
membrane of chloroplasts (TOC) and TIC supercomplexes. Tic56 mutant plants have 
an albino phenotype and are unable to grow without an external carbon source. 
Using specific enrichment of protein amino termini, we analyzed the tic56-1 and 
plastid protein import2 (toc159) mutants to assess the in vivo import capacity 
of plastids in mutants of an outer and inner envelope component of the 
anticipated TOC-TIC supercomplex. Inboth mutants, we observed processing of 
several import substrates belonging to various pathways. Our results suggest 
that despite the severe developmental defects, protein import into 
Tic56-deficient plastids is functional to a considerable degree, indicating the 
existence of alternative translocases at the inner envelope membrane.

DOI: 10.1104/pp.114.255562
PMCID: PMC4348784
PMID: 25588737 [Indexed for MEDLINE]