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SnRK2 protein kinase substrates

Phosphorylation in Arabidopsis thaliana

3962 modifications in 3277 peptides, found in 3632 proteins

Experiment Details

Exp 85


Experimental Setup
TissueSeedlings wild-type or snrk2.2/2.3/2.6
Condition50 µM ABA
PTM EnrichmentPolyMAC-Ti, PolyMAC-Zr
MS InstrumentLTQ Orbitrap Velos
MS/MS Search Parameters
Protein DatabaseArabidopsis thaliana database (39,678 entries; IPI v.3.84)
Decoy StrategyReverse decoy database
FDR Threshold0.01
Search Algorithm(s)SEQUEST
Precursor Mass Tolerance10 ppm
PTM Site AllocationPhosphoRS
Identification ScoreXCorr
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsPhosphorylation (STY)
Oxidation (M)
Other Information
CommentsTable S1, no fold changes reported in supplemental data.


Publication Information

Wang et al., 2013

PubMed ID: 23776212

No external accession available

Abstract

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11205-10. doi: 
10.1073/pnas.1308974110. Epub 2013 Jun 17.

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and 
reveals the effectors of abscisic acid action.

Wang P(1), Xue L, Batelli G, Lee S, Hou YJ, Van Oosten MJ, Zhang H, Tao WA, Zhu 
JK.

Author information:
(1)Department of Horticulture and Landscape Architecture, Purdue University, 
West Lafayette, IN 47907, USA.

Sucrose nonfermenting 1 (SNF1)-related protein kinase 2s (SnRK2s) are central 
components of abscisic acid (ABA) signaling pathways. The snrk2.2/2.3/2.6 
triple-mutant plants are nearly completely insensitive to ABA, suggesting that 
most of the molecular actions of ABA are triggered by the SnRK2s-mediated 
phosphorylation of substrate proteins. Only a few substrate proteins of the 
SnRK2s are known. To identify additional substrate proteins of the SnRK2s and 
provide insight into the molecular actions of ABA, we used quantitative 
phosphoproteomics to compare the global changes in phosphopeptides in WT and 
snrk2.2/2.3/2.6 triple mutant seedlings in response to ABA treatment. Among the 
5,386 unique phosphorylated peptides identified in this study, we found that ABA 
can increase the phosphorylation of 166 peptides and decrease the 
phosphorylation of 117 peptides in WT seedlings. In the snrk2.2/2.3/2.6 triple 
mutant, 84 of the 166 peptides, representing 58 proteins, could not be 
phosphorylated, or phosphorylation was not increased under ABA treatment. In 
vitro kinase assays suggest that most of the 58 proteins can serve as substrates 
of the SnRK2s. The SnRK2 substrates include proteins involved in flowering time 
regulation, RNA and DNA binding, miRNA and epigenetic regulation, signal 
transduction, chloroplast function, and many other cellular processes. 
Consistent with the SnRK2 phosphorylation of flowering time regulators, the 
snrk2.2/2.3/2.6 triple mutant flowered significantly earlier than WT. These 
results shed new light on the role of the SnRK2 protein kinases and on the 
downstream effectors of ABA action, and improve our understanding of plant 
responses to adverse environments.

DOI: 10.1073/pnas.1308974110
PMCID: PMC3703982
PMID: 23776212 [Indexed for MEDLINE]

Conflict of interest statement: The authors declare no conflict of interest.