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srk2dei ABA signaling phopshoproteomics

Phosphorylation in Arabidopsis thaliana

5449 modifications in 3422 peptides, found in 4449 proteins

Experiment Details

Exp 83


Experimental Setup
TissueLeaf srk2dei
ConditionAbscisic acid
PTM EnrichmentTiO2
MS InstrumentLTQ Orbitrap
MS/MS Search Parameters
Protein DatabaseTAIR8
Decoy StrategyReverse decoy database
FDR Threshold< 1.17% (MASCOT perl program)
Search Algorithm(s)MASCOT version 2.2.04
Precursor Mass Tolerance3 ppm
Identification ScoreMASCOT Score
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsPhosphorylation (STY)
Oxidation (M)
Labels18O (Peptide C-term)
Other Information
CommentsTable S2, all tabsheets, only sites with 'manual inspection: Confirmed phospho-site'.


Publication Information

Umezawa et al., 2013

PubMed ID: 23572148

No external accession available

Abstract

Sci Signal. 2013 Apr 9;6(270):rs8. doi: 10.1126/scisignal.2003509.

Genetics and phosphoproteomics reveal a protein phosphorylation network in the 
abscisic acid signaling pathway in Arabidopsis thaliana.

Umezawa T(1), Sugiyama N, Takahashi F, Anderson JC, Ishihama Y, Peck SC, 
Shinozaki K.

Author information:
(1)Faculty of Agriculture and Graduate School of Bio-Applications and Systems 
Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, 
Koganei, Tokyo 184-8588, Japan. taishi@cc.tuat.ac.jp

Abscisic acid (ABA) is a phytohormone that regulates diverse plant processes, 
including seed germination and the response to dehydration. In Arabidopsis 
thaliana, protein kinases of the SNF1-related protein kinase 2 (SnRK2) family 
are believed to transmit ABA- or dehydration-induced signals through 
phosphorylation of downstream substrates. By mass spectrometry, we identified 
proteins that were phosphorylated in Arabidopsis wild-type plants, but not in 
mutants lacking all three members of the SnRK2 family (srk2dei), treated with 
ABA or subjected to dehydration stress. The number of differentially 
phosphorylated peptides was greater in srk2dei plants treated with ABA than in 
the ones subjected to dehydration, suggesting that SnRK2 was mainly involved in 
ABA signaling rather than dehydration. We identified 35 peptides that were 
differentially phosphorylated in wild-type but not in srk2dei plants treated 
with ABA. Biochemical and genetic studies of candidate SnRK2-regulated 
phosphoproteins showed that SnRK2 promoted the ABA-induced activation of the 
mitogen-activated protein kinases AtMPK1 and AtMPK2; that SnRK2 mediated 
phosphorylation of Ser(45) in a bZIP transcription factor, AREB1 (ABA-responsive 
element binding protein 1), and stimulated ABA-responsive gene expression; and 
that a previously unknown protein, SnRK2-substrate 1 (SNS1), was phosphorylated 
in vivo by ABA-activated SnRK2s. Reverse genetic analysis revealed that SNS1 
inhibited ABA responses in Arabidopsis. Thus, by integrating genetics with 
phosphoproteomics, we identified multiple components of the ABA-responsive 
protein phosphorylation network.

DOI: 10.1126/scisignal.2003509
PMID: 23572148 [Indexed for MEDLINE]