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Conserved N-glycosylation

N-glycosylation in Arabidopsis thaliana

2681 modifications in 2596 peptides, found in 2507 proteins

Experiment Details

Exp 74


Experimental Setup
Tissue5-week rosette, small flower buds, fully open flowers. 15-day old seedlings.
ConditionControl
PTM EnrichmentLectin binding mixture (Con A, WGA, and RCA120)
MS InstrumentLTQ Orbitrap Velos
MS/MS Search Parameters
Protein DatabaseIPI Arabidopsis thaliana 3.66
Decoy StrategyReverse decoy database
FDR Threshold0.01
Search Algorithm(s)MaxQuant version 1.1.1.6
PTM Site AllocationPTM Score
Identification ScoreMaxQuant Score
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable Modifications18O Deamidation (N)
Oxidation (M)
Acetylation (Protein N-term)
Other Information
CommentsSupplemental Table S1f.


Publication Information

Zielinska et al., 2012

PubMed ID: 22633491

No external accession available

Abstract

Mol Cell. 2012 May 25;46(4):542-8. doi: 10.1016/j.molcel.2012.04.031.

Mapping N-glycosylation sites across seven evolutionarily distant species 
reveals a divergent substrate proteome despite a common core machinery.

Zielinska DF(1), Gnad F, Schropp K, Wiśniewski JR, Mann M.

Author information:
(1)Department of Proteomics and Signal Transduction, Max-Planck-Institute of 
Biochemistry, Martinsried 82152, Germany.

N-linked glycosylation is an important posttranslational modification in all 
eukaryotes, but little is known about the N-glycoproteomes in nonmammalian 
systems. Here, we measure N-glycoproteomes of the major model organisms 
Arabidopsis thaliana, Schizosaccharomyces pombe, Saccharomyces cerevisiae, 
Caenorhabditis elegans, Drosophila melanogaster, and Danio rerio, 
representatively spanning the eukaryotic domain of life. The number of detected 
N-glycosylation sites varied between 425 in fission yeast, 516 in budding yeast, 
1,794 in worm, 2,186 in plant, 2,229 in fly, and 2,254 in zebrafish. We find 
that all eukaryotic N-glycoproteomes have invariant characteristics including 
sequence recognition patterns, structural constraints, and subcellular 
localization. However, a surprisingly large percentage of the N-glycoproteome 
evolved after the phylogenetic divergences between plants, fungi, nematodes, 
insects, and vertebrates. Many N-glycosylated proteins coevolved with the rise 
of extracellular processes that are specific within corresponding phylogenetic 
groups and essential for organismal development, body growth, and organ 
formation.

Copyright © 2012 Elsevier Inc. All rights reserved.

DOI: 10.1016/j.molcel.2012.04.031
PMID: 22633491 [Indexed for MEDLINE]