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Phosphorylation in N starvation

Phosphorylation in Arabidopsis thaliana

435 modifications in 350 peptides, found in 701 proteins

Experiment Details

Exp 63


Experimental Setup
TissueSeedlings
Condition Normal or nitrogen starvation and resupply
PTM EnrichmentTiO2
MS InstrumentLTQ Orbitrap
MS/MS Search Parameters
Protein DatabaseTAIR8 + contaminants
Decoy StrategyReverse decoy database
FDR ThresholdPTM score >40
Search Algorithm(s)MASCOT version 2.2.0
Precursor Mass Tolerance10 ppm
Identification ScoreMASCOT Score
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsOxidation (M)
Phosphorylation (STY)
Other Information
CommentsPhosphat 4.0 - Defined sites (pS/T/Y).


Publication Information

Engelsberger and Schulze, 2012

PubMed ID: 22060019

No external accession available

Abstract

Plant J. 2012 Mar;69(6):978-95. doi: 10.1111/j.1365-313X.2011.04848.x. Epub 2012 
Jan 20.

Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns 
when resupplied to nitrogen-starved Arabidopsis seedlings.

Engelsberger WR(1), Schulze WX.

Author information:
(1)Max Planck Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 
14476 Golm, Germany.

Nitrogen is an essential macronutrient for plant growth and development. 
Inorganic nitrogen and its assimilation products control various metabolic, 
physiological and developmental processes. Although the transcriptional 
responses induced by nitrogen have been extensively studied in the past, our 
work here focused on the discovery of candidate proteins for regulatory events 
that are complementary to transcriptional changes. Most signaling pathways 
involve modulation of protein abundance and/or activity by protein 
phosphorylation. Therefore, we analyzed the dynamic changes in protein 
phosphorylation in membrane and soluble proteins from plants exposed to rapid 
changes in nutrient availability over a time course of 30 min. Plants were 
starved of nitrogen and subsequently resupplied with nitrogen in the form of 
nitrate or ammonium. Proteins with maximum change in their phosphorylation level 
at up to 5 min after nitrogen resupply (fast responses) included GPI-anchored 
proteins, receptor kinases and transcription factors, while proteins with 
maximum change in their phosphorylation level after 10 min of nitrogen resupply 
(late responses) included proteins involved in protein synthesis and 
degradation, as well as proteins with functions in central metabolism and 
hormone metabolism. Resupply of nitrogen in the form of nitrate or ammonium 
resulted in distinct phosphorylation patterns, mainly of proteins with signaling 
functions, transcription factors and transporters.

© 2011 The Authors. The Plant Journal © 2011 Blackwell Publishing Ltd.

DOI: 10.1111/j.1365-313X.2011.04848.x
PMCID: PMC3380553
PMID: 22060019 [Indexed for MEDLINE]