PTM Viewer PTM Viewer

cat2 Methionine oxidation - 3h stress

Methionine Oxidation in Arabidopsis thaliana

391 modifications in 354 peptides, found in 699 proteins

Experiment Details

Exp 62b


Experimental Setup
Tissue5-week cat2-2 rosette
Condition3h Photorespiratory stress
PTM EnrichmentMetOx COFRADIC
MS InstrumentLTQ Orbitrap XL
MS/MS Search Parameters
Protein DatabaseTAIR10 (27,416 entries)
Decoy Strategysee Experimental Procedures (Käll et al, 2008)
FDR ThresholdFDR 2%
Search Algorithm(s)MASCOT
Precursor Mass Tolerance10 ppm
Identification ScoreMASCOT Score
Protease semi-ArgC/P
Fixed ModificationsOxidation (M)
Variable ModificationsAcetylation (Protein N-term)
Pyro-glu from Q
LabelsPropionyl light/heavy (+70.042/+74.056 Da) (Peptide N-term)
Propionyl light/heavy (+70.042/+74.056 Da) (K)
Other Information
CommentsSupplemental Dataset S1. Log2 fold changes (corrected ones) are displayed for the peptide intensity ratio of stress versus control sample.


Publication Information

Jacques et al., 2015

PubMed ID: 25693801

ProteomeXchange: PXD001286

Abstract

Mol Cell Proteomics. 2015 May;14(5):1217-29. doi: 10.1074/mcp.M114.043729. Epub 
2015 Feb 18.

Protein Methionine Sulfoxide Dynamics in Arabidopsis thaliana under Oxidative 
Stress.

Jacques S(1), Ghesquière B(2), De Bock PJ(2), Demol H(2), Wahni K(3), Willems 
P(1), Messens J(3), Van Breusegem F(4), Gevaert K(5).

Author information:
(1)From the Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium, 
Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium, Department 
of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, 
Department of Plant Biotechnology and Bioinformatics, Ghent University, 
Technologiepark 927, B-9052 Ghent, Belgium.
(2)From the Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium, 
Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium.
(3)VIB Structural Biology Research Center, Vrije Universiteit Brussel (VUB), 
B-1050 Brussels, Belgium, Brussels Center for Redox Biology, B-1050 Brussels, 
Belgium, Structural Biology Brussels, Vrije Universiteit Brussel, B-1050 
Brussels, Belgium.
(4)Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, 
Belgium, Department of Plant Biotechnology and Bioinformatics, Ghent University, 
Technologiepark 927, B-9052 Ghent, Belgium, frank.vanbreusegem@psb.ugent.be.
(5)From the Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium, 
Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium, 
kris.gevaert@vib-ugent.be.

Reactive oxygen species such as hydrogen peroxide can modify proteins via direct 
oxidation of their sulfur-containing amino acids, cysteine and methionine. 
Methionine oxidation, studied here, is a reversible posttranslational 
modification that is emerging as a mechanism by which proteins perceive 
oxidative stress and function in redox signaling. Identification of proteins 
with oxidized methionines is the first prerequisite toward understanding the 
functional effect of methionine oxidation on proteins and the biological 
processes in which they are involved. Here, we describe a proteome-wide study of 
in vivo protein-bound methionine oxidation in plants upon oxidative stress using 
Arabidopsis thaliana catalase 2 knock-out plants as a model system. We 
identified over 500 sites of oxidation in about 400 proteins and quantified the 
differences in oxidation between wild-type and catalase 2 knock-out plants. We 
show that the activity of two plant-specific glutathione S-transferases, GSTF9 
and GSTT23, is significantly reduced upon oxidation. And, by sampling over time, 
we mapped the dynamics of methionine oxidation and gained new insights into this 
complex and dynamic landscape of a part of the plant proteome that is sculpted 
by oxidative stress.

© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

DOI: 10.1074/mcp.M114.043729
PMCID: PMC4424394
PMID: 25693801 [Indexed for MEDLINE]