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OxiTRAQ Arabidopsis - 5 mM H2O2 versus control

Reversible Cysteine Oxidation in Arabidopsis thaliana

1100 modifications in 994 peptides, found in 1870 proteins

Experiment Details

Exp 47


Experimental Setup
TissueCell culture, T87
Condition10 min 5mM Hydrogen peroxide
PTM EnrichmentOxiTRAQ
MS InstrumentLTQ Orbitrap Velos
MS/MS Search Parameters
Protein DatabaseTAIR10
Decoy StrategyReverse decoy database
FDR Threshold0.01
Search Algorithm(s)MASCOT version 2.3
Precursor Mass Tolerance10 ppm
ProteaseTrypsin
Variable ModificationsOxidation (M)
Carbamidomethyl (C)
N-ethylmalmeide (C)
iTRAQ (Y)
LabelsiTRAQ (K)
iTRAQ (Peptide N-term)
Other Information
CommentsSupplemental Table S1. Significant redox-sensitive cysteines derived from Table S2, |fold change| > 1.31 and p-value < 0.05.


Publication Information

Liu et al., 2014

PubMed ID: 24376095

No external accession available

Abstract

Proteomics. 2014 Mar;14(6):750-62. doi: 10.1002/pmic.201300307. Epub 2014 Jan 
28.

Identification of redox-sensitive cysteines in the Arabidopsis proteome using 
OxiTRAQ, a quantitative redox proteomics method.

Liu P(1), Zhang H, Wang H, Xia Y.

Author information:
(1)Department of Biology, Hong Kong Baptist University, Hong Kong, P. R. China.

Cellular redox status plays a key role in mediating various physiological and 
developmental processes often through modulating activities of redox-sensitive 
proteins. Various stresses trigger over-production of reactive oxygen/nitrogen 
species which lead to oxidative modifications of redox-sensitive proteins. 
Identification and characterization of redox-sensitive proteins are important 
steps toward understanding molecular mechanisms of stress responses. Here, we 
report a high-throughput quantitative proteomic approach termed OxiTRAQ for 
identifying proteins whose thiols undergo reversible oxidative modifications in 
Arabidopsis cells subjected to oxidative stress. In this approach, a 
biotinylated thiol-reactive reagent is used for differential labeling of reduced 
and oxidized thiols. The biotin-tagged peptides are affinity purified, labeled 
with iTRAQ reagents, and analyzed using a paralleled HCD-CID fragmentation mode 
in an LTQ-Orbitrap. With this approach, we identified 195 cysteine-containing 
peptides from 179 proteins whose thiols underwent oxidative modifications in 
Arabidopsis cells following the treatment with hydrogen peroxide. A majority of 
those redox-sensitive proteins, including several transcription factors, were 
not identified by previous redox proteomics studies. This approach allows 
identification of the specific redox-regulated cysteine residues, and offers an 
effective tool for elucidation of redox proteomes.

© 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

DOI: 10.1002/pmic.201300307
PMID: 24376095 [Indexed for MEDLINE]