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Pollen phosphoproteome Arabidopsis

Phosphorylation in Arabidopsis thaliana

329 modifications in 320 peptides, found in 599 proteins

Experiment Details

Exp 43


Experimental Setup
TissuePollen
ConditionControl
PTM EnrichmentFe-IMAC, TiO2
MS InstrumentLTQ Orbitrap XL
MS/MS Search Parameters
Protein DatabaseTAIR10 + contaminants
Decoy StrategyReverse decoy database
FDR ThresholdFDR 0.3% estimated
Search Algorithm(s)MASCOT version 2.3
Precursor Mass Tolerance10 ppm
Identification ScoreMASCOT Score
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsOxidation (M)
Phosphorylation (STY)
Deamidation (NQ)
Pyro-glu (N-term Q)
Carbamidomethyl (N-term DEHK)
Other Information
CommentsPhosphat 4.0 - Defined sites (pS/T/Y).


Publication Information

Mayank et al., 2012

PubMed ID: 22631563

No external accession available

Abstract

Plant J. 2012 Oct;72(1):89-101. doi: 10.1111/j.1365-313X.2012.05061.x. Epub 2012 
Jul 12.

Characterization of the phosphoproteome of mature Arabidopsis pollen.

Mayank P(1), Grossman J, Wuest S, Boisson-Dernier A, Roschitzki B, Nanni P, 
Nühse T, Grossniklaus U.

Author information:
(1)Centre for Model Organism Proteomes, University of Zürich, Zürich, 
Switzerland.

Successful pollination depends on cell-cell communication and rapid cellular 
responses. In Arabidopsis, the pollen grain lands on a dry stigma, where it 
hydrates, germinates and grows a pollen tube that delivers the sperm cells to 
the female gametophyte to effect double fertilization. Various studies have 
emphasized that a mature, dehydrated pollen grain contains all the transcripts 
and proteins required for germination and initial pollen tube growth. Therefore, 
it is important to explore the role of post-translational modifications (here 
phosphorylation), through which many processes induced by pollination are 
probably controlled. We report here a phosphoproteomic study conducted on mature 
Arabidopsis pollen grains with the aim of identifying potential targets of 
phosphorylation. Using three enrichment chromatographies, a broad coverage of 
pollen phosphoproteins with 962 phosphorylated peptides corresponding to 598 
phosphoproteins was obtained. Additionally, 609 confirmed phosphorylation sites 
were successfully mapped. Two hundred and seven of 240 phosphoproteins that were 
absent from the PhosPhAt database containing the empirical Arabidopsis 
phosphoproteome showed highly enriched expression in pollen. Gene ontology (GO) 
enrichment analysis of these 240 phosphoproteins shows an over-representation of 
GO categories crucial for pollen tube growth, suggesting that phosphorylation 
regulates later processes of pollen development. Moreover, motif analyses of 
pollen phosphopeptides showed an over-representation of motifs specific for 
Ca²⁺/calmodulin-dependent protein kinases, mitogen-activated protein kinases, 
and binding motifs for 14-3-3 proteins. Lastly, one tyrosine phosphorylation 
site was identified, validating the TDY dual phosphorylation motif of 
mitogen-activated protein kinases (MPK8/MPK15). This study provides a solid 
basis to further explore the role of phosphorylation during pollen development.

© 2012 The Authors. The Plant Journal © 2012 Blackwell Publishing Ltd.

DOI: 10.1111/j.1365-313X.2012.05061.x
PMID: 22631563 [Indexed for MEDLINE]