PTM Viewer PTM Viewer

Lysine acetylation gel-based Finkemeier et al

Acetylation in Arabidopsis thaliana

110 modifications in 96 peptides, found in 203 proteins

Experiment Details

Exp 37


Experimental Setup
TissueCell culture, leaf
ConditionControl
PTM Enrichmentacetyl-lysine antibody
MS InstrumentLTQ Orbitrap Velos, LTQ Orbitrap XL
MS/MS Search Parameters
Protein DatabaseTAIR8
Decoy StrategyReverse decoy database
FDR Threshold0.01
Search Algorithm(s)MASCOT, X!Tandem, OMSSA
Precursor Mass Tolerance2.5 Da, 20 ppm
Identification Scorei-probability
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsOxidation (M)
Acetylation (K)
Other Information
CommentsSupplemental Table S2. The i-probability value is calculated from the threshold scores used by different search engines such as the Mascot or X-Tandem! score and translated into a single i-probability value using Bayesian statistics (Keller et al., 2002). The closer the i-probability value is to 1, the more likely the peptide hit is to be correct.


Publication Information

Finkemeier et al., 2011

PubMed ID: 21311031

No external accession available

Abstract

Plant Physiol. 2011 Apr;155(4):1779-90. doi: 10.1104/pp.110.171595. Epub 2011 
Feb 10.

Proteins of diverse function and subcellular location are lysine acetylated in 
Arabidopsis.

Finkemeier I(1), Laxa M, Miguet L, Howden AJ, Sweetlove LJ.

Author information:
(1)Department of Plant Sciences, University of Oxford, Oxford OX1 3RB, United 
Kingdom.

Acetylation of the ε-amino group of lysine (Lys) is a reversible 
posttranslational modification recently discovered to be widespread, occurring 
on proteins outside the nucleus, in most subcellular locations in mammalian 
cells. Almost nothing is known about this modification in plants beyond the 
well-studied acetylation of histone proteins in the nucleus. Here, we report 
that Lys acetylation in plants also occurs on organellar and cytosolic proteins. 
We identified 91 Lys-acetylated sites on 74 proteins of diverse functional 
classes. Furthermore, our study suggests that Lys acetylation may be an 
important posttranslational modification in the chloroplast, since four Calvin 
cycle enzymes were acetylated. The plastid-encoded large subunit of Rubisco 
stands out because of the large number of acetylated sites occurring at 
important Lys residues that are involved in Rubisco tertiary structure formation 
and catalytic function. Using the human recombinant deacetylase sirtuin 3, it 
was demonstrated that Lys deacetylation significantly affects Rubisco activity 
as well as the activities of other central metabolic enzymes, such as the Calvin 
cycle enzyme phosphoglycerate kinase, the glycolytic enzyme glyceraldehyde 
3-phosphate dehydrogenase, and the tricarboxylic acid cycle enzyme malate 
dehydrogenase. Our results demonstrate that Lys acetylation also occurs on 
proteins outside the nucleus in Arabidopsis (Arabidopsis thaliana) and that Lys 
acetylation could be important in the regulation of key metabolic enzymes.

DOI: 10.1104/pp.110.171595
PMCID: PMC3091095
PMID: 21311031 [Indexed for MEDLINE]