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Lysine acetylation gel-based Arabidopsis

Acetylation in Arabidopsis thaliana

52 modifications in 47 peptides, found in 125 proteins

Experiment Details

Exp 36


Experimental Setup
TissuePlants Ws-2
ConditionControl
PTM Enrichmentacetyl-lysine antibody
MS InstrumentQ-TOF
MS/MS Search Parameters
Protein DatabaseNCBI Arabidopsis non-redundant database
Decoy StrategyReverse decoy database
FDR Threshold0.05
Search Algorithm(s)MASCOT version 2.3
Precursor Mass Tolerance0.5 Da
Identification ScoreMASCOT Score
ProteaseTrypsin, GluC
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsOxidation (M)
Acetylation (Protein N-term)
Acetylation (K)
Other Information
CommentsSupplemental Table S2.


Publication Information

Wu et al., 2011

PubMed ID: 21311030

No external accession available

Abstract

Plant Physiol. 2011 Apr;155(4):1769-78. doi: 10.1104/pp.110.165852. Epub 2011 
Feb 10.

Lysine acetylation is a widespread protein modification for diverse proteins in 
Arabidopsis.

Wu X(1), Oh MH, Schwarz EM, Larue CT, Sivaguru M, Imai BS, Yau PM, Ort DR, Huber 
SC.

Author information:
(1)Program in Physiological and Molecular Plant Biology , University of 
Illinois, Urbana, Illinois 61801, USA.

Lysine acetylation (LysAc), a form of reversible protein posttranslational 
modification previously known only for histone regulation in plants, is shown to 
be widespread in Arabidopsis (Arabidopsis thaliana). Sixty-four Lys modification 
sites were identified on 57 proteins, which operate in a wide variety of 
pathways/processes and are located in various cellular compartments. A number of 
photosynthesis-related proteins are among this group of LysAc proteins, 
including photosystem II (PSII) subunits, light-harvesting chlorophyll 
a/b-binding proteins (LHCb), Rubisco large and small subunits, and chloroplastic 
ATP synthase (β-subunit). Using two-dimensional native green/sodium dodecyl 
sulfate gels, the loosely PSII-bound LHCb was separated from the LHCb that is 
tightly bound to PSII and shown to have substantially higher level of LysAc, 
implying that LysAc may play a role in distributing the LHCb complexes. Several 
potential LysAc sites were identified on eukaryotic elongation factor-1A 
(eEF-1A) by liquid chromatography/mass spectrometry and using sequence- and 
modification-specific antibodies the acetylation of Lys-227 and Lys-306 was 
established. Lys-306 is contained within a predicted calmodulin-binding sequence 
and acetylation of Lys-306 strongly inhibited the interactions of eEF-1A 
synthetic peptides with calmodulin recombinant proteins in vitro. These results 
suggest that LysAc of eEF-1A may directly affect regulatory properties and 
localization of the protein within the cell. Overall, these findings reveal the 
possibility that reversible LysAc may be an important and previously unknown 
regulatory mechanism of a large number of nonhistone proteins affecting a wide 
range of pathways and processes in Arabidopsis and likely in all plants.

DOI: 10.1104/pp.110.165852
PMCID: PMC3091122
PMID: 21311030 [Indexed for MEDLINE]