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Mitochondrial phosphoproteome

Phosphorylation in Arabidopsis thaliana

63 modifications in 60 peptides, found in 135 proteins

Experiment Details

Exp 32


Experimental Setup
TissueCell culture Ler-0, mitochondria
ConditionControl
PTM EnrichmentTiO2
MS InstrumentQ-TOF
MS/MS Search Parameters
Protein DatabaseTAIR7 + contaminants (31,956 sequences)
FDR ThresholdManual inspection
Search Algorithm(s)MASCOT version 2.2.03
Precursor Mass Tolerance0.1 Da
Identification ScoreMASCOT Score
ProteaseTrypsin
Variable ModificationsOxidation (M)
Phosphorylation (STY)
Carbamidomethyl (C)
Other Information
Comments Phosphat 4.0 - Defined sites (pS/T/Y)


Publication Information

Ito et al., 2009

PubMed ID: 19688752

No external accession available

Abstract

Proteomics. 2009 Sep;9(17):4229-40. doi: 10.1002/pmic.200900064.

A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.

Ito J(1), Taylor NL, Castleden I, Weckwerth W, Millar AH, Heazlewood JL.

Author information:
(1)Australian Research Council Centre of Excellence in Plant Energy Biology, The 
University of Western Australia, Crawley, Western Australia, Australia.

Plant mitochondria play central roles in cellular energy production, metabolism 
and stress responses. Recent phosphoproteomic studies in mammalian and yeast 
mitochondria have presented evidence indicating that protein phosphorylation is 
a likely regulatory mechanism across a broad range of important mitochondrial 
processes. This study investigated protein phosphorylation in purified 
mitochondria from cell suspensions of the model plant Arabidopsis thaliana using 
affinity enrichment and proteomic tools. Eighteen putative phosphoproteins 
consisting of mitochondrial metabolic enzymes, HSPs, a protease and several 
proteins of unknown function were detected on 2-DE separations of Arabidopsis 
mitochondrial proteins and affinity-enriched phosphoproteins using the Pro-Q 
Diamond phospho-specific in-gel dye. Comparisons with mitochondrial 
phosphoproteomes of yeast and mouse indicate that these three species share few 
validated phosphoproteins. Phosphorylation sites for seven of the eighteen 
mitochondrial proteins were characterized by titanium dioxide enrichment and 
MS/MS. In the process, 71 phosphopeptides from Arabidopsis proteins which are 
not present in mitochondria but found as contaminants in various types of 
mitochondrial preparations were also identified, indicating the low level of 
phosphorylation of mitochondrial components compared with other cellular 
components in Arabidopsis. Information gained from this study provides a better 
understanding of protein phosphorylation at both the subcellular and the 
cellular level in Arabidopsis.

DOI: 10.1002/pmic.200900064
PMID: 19688752 [Indexed for MEDLINE]