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Ethylene-regulated phosphorylation ein2 mutant

Phosphorylation in Arabidopsis thaliana

147 modifications in 139 peptides, found in 306 proteins

Experiment Details

Exp 30


Experimental Setup
TissueSeedlings ein2-5
ConditionAmbient air or 12h 10 ppm ethylene
PTM EnrichmentTiO2 and Fe-IMAC
MS InstrumentQ-TOF
MS/MS Search Parameters
Protein DatabaseTAIR7
Decoy StrategyReverse decoy database
FDR ThresholdFDR 0.16% (Scaffold software)
Search Algorithm(s)MASCOT
Precursor Mass Tolerance100 ppm
Identification ScoreMASCOT Score
ProteaseTrypsin
Fixed ModificationsCarbamidomethyl (C)
Variable ModificationsOxidation (M)
Phosphorylation (STY)
Other Information
Comments Phosphat 4.0 - Defined sites (pS/T/Y)


Publication Information

Li et al., 2009

PubMed ID: 19253305

No external accession available

Abstract

Proteomics. 2009 Mar;9(6):1646-61. doi: 10.1002/pmic.200800420.

Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in 
etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations 
coupled with a hybrid quadrupole time-of-flight mass spectrometer.

Li H(1), Wong WS, Zhu L, Guo HW, Ecker J, Li N.

Author information:
(1)Department of Biology, The Hong Kong University of Science and Technology, 
Hong Kong SAR, PR China.

Ethylene regulates a variety of stress responses and developmental adaptation in 
plants. In the present study, the phosphoproteomics is adopted to investigate 
the differential protein phosphorylation by ethylene in Arabidopsis 
ethylene-insensitive 2 (ein2) mutant. A total of 224 phosphopeptides were 
identified, of which 64 phosphopeptides were detected three or more times. 
Ethylene induces a general reduction in phosphorylated proteins in ein2. 
Totally, three ethylene-enhanced and three ethylene-repressible unique 
phosphopeptides were identified, respectively. Classification of the cellular 
functions of these phosphoproteins revealed that 55.5% of them are related to 
signaling and gene expression. Peptide sequence alignment reveals two highly 
conserved phosphorylation motifs, PRVD/GSx and SPDYxx. Alignment of these 
phosphopeptides with Arabidopsis proteins reveals five phosphorylation motifs. 
Both ethylene-enhanced and -repressible phosphopeptides present in these motifs. 
EIL-1, ERF110 transcription factors and Hua enhancer 4 (HEN4) are predicted to 
contain one of the phosphorylation motifs. The phosphorylation of the 
motif-containing peptides has been validated by the in vitro kinase assays 
coupled with MS analysis. The differential regulation of phosphorylation by 
ethylene is substantiated by Western dot blot analysis. Taken together, these 
results suggest that ethylene signals may be transduced by a phosphor-relay from 
receptors to transcriptional events via both ein2-dependent and -independent 
pathways.

DOI: 10.1002/pmic.200800420
PMID: 19253305 [Indexed for MEDLINE]