Publications

325. The 18S rRNA from Odontophrynus americanus 2n and 4n (Amphibia, Anura) reveals unusual extra sequences in the variable region V2

ALVARES, LE, WUYTS, J, VAN DE PEER, Y, SILVA, EP, COUTINHO, LL, BRISON, O, RUIZ, IRG

(2004) - GENOME

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324. Recent developments in computational approaches for uncovering genomic homology

SIMILLION, C, VANDEPOELE, K, VAN DE PEER, Y

(2004) - BIOESSAYS

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323. Tetraodon genome confirms Takifugu findings: most fish are ancient polyploids

Yves Van de Peer

(2004) - Genome Biology

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322. Splice site prediction in eukaryote genome sequences: the algorithmic issues

Degroeve S., Saeys Y., De Baets B., Van de Peer Y., Rouzé P.

(2004) - The New Avenues in Bioinformatics

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321. The first green lineage cdc25 dual-specificity phosphatase

Khadaroo, B., Robbens, S., Ferraz, C., Derelle, E., Eychenié, S., Cooke, R., Peaucellier, G., Delseny, M., Demaille, J., Van De Peer, Y., Picard, A., Moreau, H.

(2004) - Cell Cycle

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320. The European ribosomal RNA database

WUYTS, J, PERRIERE, G, VAN DE PEER, Y

(2004) - NUCLEIC ACIDS RESEARCH

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319. The quest for genomic homology

Vandepoele, K., Simillion, C., Van de Peer, Y.

(2004) - Current Genomics

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318. Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates

VANDEPOELE, K, DE VOS, W, TAYLOR, JS, MEYER, A, VAN DE PEER, Y

(2004) - PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

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317. Detection of 91 potential in plant conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes

BONNET, E, WUYTS, J, ROUZE, P, VAN DE PEER, Y

(2004) - PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

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316. Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences

BONNET, E, WUYTS, J, ROUZE, P, VAN DE PEER, Y

(2004) - BIOINFORMATICS

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315. Feature selection for splice site prediction: A new method using EDA-based feature ranking

Saeys, Y., Degroeve, S., Aeyels, D., Rouzé, P., Van de Peer, Y.

(2004) - BMC Bioinformatics

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314. Feature selection for splice site prediction: A new method using EDA-based feature ranking

SAEYS, Y, DEGROEVE, S, AEYELS, D, ROUZE, P, VAN DE PEER, Y

(2004) - BMC BIOINFORMATICS

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313. Digging into Acceptor Splice Site Prediction: An Iterative Feature Selection Approach

Yvan Saeys, Sven Degroeve, Yves Van de Peer

(2004) - Lecture Notes in Computer Science

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312. Gene duplication and biased functional retention of paralogs in bacterial genomes

GEVERS, D, VANDEPOELE, K, SIMILLION, C, VAN DE PEER, Y

(2004) - TRENDS IN MICROBIOLOGY

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311. Building genomic profiles for uncovering segmental homology in the twilight zone

SIMILLION, C, VANDEPOELE, K, SAEYS, Y, VAN DE PEER, Y

(2004) - GENOME RESEARCH

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310. 'Horizontal' plant biology on the rise

Yves Van de Peer

(2004) - Genome Biology

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309. Preparation and relevance of a cross-coupling product between sinapyl alcohol and sinapyl p-hydroxybenzoate

Fachuang Lu, John Ralph, Kris Morreel, Eric Messens, Wout Boerjan

(2004) - Organic & Biomolecular Chemistry

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308. An easy and versatile embedding method for transverse sections

De Smet, I, Chaerle, P, Vanneste, S, Rycke, RD, Inze, D, Beeckman, T

(2004) - Journal of Microscopy-Oxford

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307. Phenolic Profiling of Caffeic Acid O-Methyltransferase-Deficient Poplar Reveals Novel Benzodioxane Oligolignols

Kris Morreel, John Ralph, Fachuang Lu, Geert Goeminne, Roger Busson, Piet Herdewijn, Jan L. Goeman, Johan Van der Eycken, Wout Boerjan, Eric Messens

(2004) - Plant Physiology

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306. Heterodimerization and endocytosis of Arabidopsis brassinosteroid receptors BRI1 and AtSERK3 (BAK1).

Russinova E, Borst JW, Kwaaitaal M, Caño-Delgado A, Yin Y, Chory J, de Vries SC

(2004) -

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305. A technology platform for the fast production of monoclonal recombinant antibodies against plant proteins and peptides.

Eeckhout D, De Clercq A, Van De Slijke E, Van Leene J, Stals H, Casteels P, Persiau G, Vercammen D, Van Breusegem F, Zabeau M, Inzé D, Jespers L, Depicker A, De Jaeger G

(2004) -

DOI
304. Profiling of Oligolignols Reveals Monolignol Coupling Conditions in Lignifying Poplar Xylem

Kris Morreel, John Ralph, Hoon Kim, Fachuang Lu, Geert Goeminne, Sally Ralph, Eric Messens, Wout Boerjan

(2004) - Plant Physiology

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303. Rhizobium infection: lessons from the versatile nodulation behaviour of water-tolerant legumes.

Goormachtig S, Capoen W, Holsters M

(2004) -

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302. Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins.

Van Damme D, Bouget FY, Van Poucke K, Inzé D, Geelen D

(2004) - The Plant journal : for cell and molecular biology

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301. In vivo dynamics and differential microtubule-binding activities of MAP65 proteins.

Van Damme D, Van Poucke K, Boutant E, Ritzenthaler C, Inzé D, Geelen D

(2004) - Plant physiology

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300. The plant-specific cyclin-dependent kinase CDKB1;1 and transcription factor E2Fa-DPa control the balance of mitotically dividing and endoreduplicating cells in Arabidopsis.

Boudolf V, Vlieghe K, Beemster GT, Magyar Z, Torres Acosta JA, Maes S, Van Der Schueren E, Inzé D, De Veylder L

(2004) -

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299. Type II metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana cleave substrates after arginine and lysine.

Vercammen D, van de Cotte B, De Jaeger G, Eeckhout D, Casteels P, Vandepoele K, Vandenberghe I, Van Beeumen J, Inzé D, Van Breusegem F

(2004) -

DOI
298. Reactive oxygen gene network of plants.

Mittler R, Vanderauwera S, Gollery M, Van Breusegem F

(2004) -

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297. Computational approaches to unveiling ancient genome duplications

Yves Van de Peer

(2004) - Nature Reviews Genetics

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296. Molecular Phenotyping of the pal1 and pal2 Mutants of Arabidopsis thaliana Reveals Far-Reaching Consequences on Phenylpropanoid, Amino Acid, and Carbohydrate Metabolism

Antje Rohde, Kris Morreel, John Ralph, Geert Goeminne, Vanessa Hostyn, Riet De Rycke, Sergej Kushnir, Jan Van Doorsselaere, Jean-Paul Joseleau, Marnik Vuylsteke, Gonzalez Van Driessche, Jozef Van Beeumen, Eric Messens, Wout Boerjan

(2004) - The Plant Cell

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295. Genetic and physical mapping of Melampsora rust resistance genes in Populus and characterization of linkage disequilibrium and flanking genomic sequence

T.‐M. Yin, S. P. DiFazio, L. E. Gunter, S. S. Jawdy, W. Boerjan, G. A. Tuskan

(2004) - New Phytologist

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294. Characterization of the Arabidopsis thaliana Arath;CDC25 dual-specificity tyrosine phosphatase.

Landrieu I, Hassan S, Sauty M, Dewitte F, Wieruszeski JM, Inzé D, De Veylder L, Lippens G

(2004) -

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293. A small CDC25 dual-specificity tyrosine-phosphatase isoform in Arabidopsis thaliana.

Landrieu I, da Costa M, De Veylder L, Dewitte F, Vandepoele K, Hassan S, Wieruszeski JM, Corellou F, Faure JD, Van Montagu M, Inzé D, Lippens G

(2004) -

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292. Gene flow between cultivated poplars and native black poplar (Populus nigra L.): a case study along the river Meuse on the Dutch–Belgian border

A Vanden Broeck, V Storme, J.E Cottrell, W Boerjan, E Van Bockstaele, P Quataert, J Van Slycken

(2004) - Forest Ecology and Management

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291. Disclosing the subterranean treasury of plants.

Tom Beeckman

(2004) - Trends in Biotechnology

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290. A plant-specific subclass of C-terminal kinesins contains a conserved a-type cyclin-dependent kinase site implicated in folding and dimerization.

Vanstraelen M, Torres Acosta JA, De Veylder L, Inzé D, Geelen D

(2004) -

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289. Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana.

Vandenabeele S, Vanderauwera S, Vuylsteke M, Rombauts S, Langebartels C, Seidlitz HK, Zabeau M, Van Montagu M, Inzé D, Van Breusegem F

(2004) -

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288. Belo Horizonte virus: a vaccinia-like virus lacking the A-type inclusion body gene isolated from infected mice

Giliane S. Trindade, Flávio G. da Fonseca, João T. Marques, Sueli Diniz, Juliana A. Leite, Stefanie De Bodt, Yves Van der Peer, Cláudio A. Bonjardim, Paulo C. P. Ferreira, Erna G. Kroon

(2004) - Journal of General Virology

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287. Molecular characterization of Arabidopsis PHO80 like proteins, a novel class of CDKA;1 interacting cyclins

Torres Acosta JA, de Almeida Engler J, Raes J, Magyar Z, De Groodt R, Inzé D, De Veylder L

(2004) - Cellular and Molecular Life Sciences

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286. Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements

M. Lescot, S. Rombauts, J. Zhang, S. Aubourg, C. Mathé, S. Jansson, P. Rouzé, W. Boerjan

(2004) - Theoretical and Applied Genetics

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285. Analysis of the spatial expression pattern of seven Kip related proteins (KRPs) in the shoot apex of Arabidopsis thaliana.

Ormenese S, de Almeida Engler J, De Groodt R, De Veylder L, Inzé D, Jacqmard A

(2004) -

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284. B1-type cyclin-dependent kinases are essential for the formation of stomatal complexes in Arabidopsis thaliana.

Boudolf V, Barrôco R, Engler Jde A, Verkest A, Beeckman T, Naudts M, Inzé D, De Veylder L

(2004) -

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283. Ex-situ conservation of Black poplar in Europe: genetic diversity in nine gene bank collections and their value for nature development

V. Storme, A. Vanden Broeck, B. Ivens, D. Halfmaerten, J. Van Slycken, S. Castiglione, F. Grassi, T. Fossati, J. E. Cottrell, H. E. Tabbener, F. Lefèvre, C. Saintagne, S. Fluch, V. Krystufek, K. Burg, S. Bordács, A. Borovics, K. Gebhardt, B. Vornam, A. Pohl, N. Alba, D. Agúndez, C. Maestro, E. Notivol, J. Bovenschen, B. C. van Dam, J. van der Schoot, B. Vosman, W. Boerjan, M. J. M. Smulders

(2004) - Theoretical and Applied Genetics

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282. Switch from intracellular to intercellular invasion during water stress-tolerant legume nodulation.

Goormachtig S, Capoen W, James EK, Holsters M

(2004) -

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281. Phenotypic alterations in Arabidopsis thaliana plants caused by Rhodococcus fascians infection

Carmem-Lara de O. Manes, Tom Beeckman, Tita Ritsema, Marc Van Montagu, Koen Goethals, Marcelle Holsters

(2004) - Journal of Plant Research

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280. Conditional, recombinase-mediated expression of genes in plant cell cultures.

Joubès J, De Schutter K, Verkest A, Inzé D, De Veylder L

(2004) -

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279. Conservation of RNA structures enables TNV and BYDV 5' and 3' elements to cooperate synergistically in cap-independent translation.

Meulewaeter F, van Lipzig R, Gultyaev AP, Pleij CW, Van Damme D, Cornelissen M, van Eldik G

(2004) - Nucleic acids research

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278. B1-type cyclin-dependent kinases are essential for the formation of stomatal complexes in Arabidopsis thaliana.

Veronique Boudolf, Barrôco R, Engler Jde A, Verkest A, Tom Beeckman, Naudts M, Dirk Inzé, Lieven De Veylder

(2004) - The Plant Cell

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277. Transcript profiling of early lateral root initiation.

Kristiina Himanen, Vuylsteke M, Steffen Vanneste, Steven Vercruysse, Boucheron E, Alard P, Chriqui D, Van Montagu M, Dirk Inzé, Tom Beeckman

(2004) - Proceedings of the National Academy of Sciences of the United States of America

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276. Lignins: Natural polymers from oxidative coupling of 4-hydroxyphenyl- propanoids

John Ralph, Knut Lundquist, Gösta Brunow, Fachuang Lu, Hoon Kim, Paul F. Schatz, Jane M. Marita, Ronald D. Hatfield, Sally A. Ralph, Jørgen Holst Christensen, Wout Boerjan

(2004) - Phytochemistry Reviews

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275. Nodule-enhanced protease inhibitor gene: emerging patterns of gene expression in nodule development on Sesbania rostrata.

Lievens S, Goormachtig S, Holsters M

(2004) -

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274. An easy and versatile embedding method for transverse sections.

Ive De Smet, Peter Chaerle, Steffen Vanneste, De Rycke R, Dirk Inzé, Tom Beeckman

(2004) - Journal of Microscopy

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