Novikova Polina

Novikova Polina - Group leader @ Ecological genomics

28. Diploid origins and early genome stabilization in the allotetraploid Arabidopsis suecica

Robin Burns, Anna Glushkevich, Aboli Kulkarni, Uliana K. Kolesnikova, Filip Kolář, Alison Dawn Scott, Polina Yu. Novikova

(2026/01) - New Phytologist

DOI
27. Life-history trade-offs explain local adaptation in Arabidopsis thaliana

Benjamin Brachi, Danièle L Filiault, Rahul Pisupati, Tal Dahan-Meir, Anna Igolkina, Alison Anastasio, Mathew S Box, Susan Duncan, Talia L Karasov, Envel Kerdaffrec, Laura Merwin, Timothy C Morton, Viktoria Nizhynska, Polina Yu Novikova, Fernando Rabanal, Takashi Tsuchimatsu, Torbjörn Säll, Caroline Dean, Svante Holm, Joy Bergelson, Magnus Nordborg

(2025/08) -

DOI
26. Identification of a gene conferring broad-spectrum orthotospovirus resistance in Solanaceae

Jiongjiong Chen, Hanhui Kuang, Polina Yu. Novikova, Xiaorong Tao, Min Zhu, Yong Liu, Chongkun Zuo, Cheng Yuan, Jianmin Zeng, Haiqin Yu, Zhijun Tong, Xueyi Sui, Changjun Huang, Jie Wang, Weishu Fan, Yi Xu

(2025/06) - Science Advances

DOI
25. Multiple autopolyploid Arabidopsis lyrata populations stabilized by long-range adaptive introgression across Eurasia

Scott, Alison D, Kolesnikova, Uliana, Glushkevich, Anna, Steinmann, Laura, Tikhomirov, Nikita, Pfordt, Ursula, Bohut́ınská, Magdalena, Burns, Robin, Seregin, Alexey P, Kolar, Filip, others

(2025) - Molecular Biology and Evolution

No link available
24. Polyploid genome assembly of Cardamine chenopodiifolia

Aurélia Emonet, Mohamed Awad, Nikita Tikhomirov, Maria Vasilarou, Miguel Pérez-Antón, Xiangchao Gan, Polina Yu. Novikova, Angela Hay

(2024/12) - Gigabyte

DOI
23. Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment

Ma, Xiao, Vanneste, Steffen, Chang, Jiyang, Ambrosino, Luca, Barry, Kerrie, Bayer, Till, Bobrov, Alexander A, Boston, LoriBeth, Campbell, Justin E, Chen, Hengchi, others

(2024) - Nature Plants

No link available
22. Ancestral self-compatibility facilitates the establishment of allopolyploids in Brassicaceae

Polina Yu. Novikova, Uliana K. Kolesnikova, Alison Dawn Scott

(2023/03) - Plant Reproduction

DOI
21. Long‐read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity

Dan G. Bock, Jianquan Liu, Polina Novikova, Loren H. Rieseberg

(2023/03) - Molecular Ecology

DOI
20. Inference of polyploid origin and inheritance mode from population genomic data

Scott, Alison Dawn, Van de Velde, Jozefien D, Novikova, Polina Yu

(2023) - Polyploidy: Methods and Protocols

No link available
19. Cycles of satellite and transposon evolution in Arabidopsis centromeres

Wlodzimierz, Piotr, Rabanal, Fernando A, Burns, Robin, Naish, Matthew, Primetis, Elias, Scott, Alison, Mandáková, Terezie, Gorringe, Nicola, Tock, Andrew J, Holland, Daniel, others

(2023) - Nature

No link available
18. Transition to self-compatibility associated with dominant S-allele in a diploid Siberian progenitor of allotetraploid Arabidopsis kamchatica revealed by Arabidopsis lyrata genomes

Kolesnikova, Uliana K, Scott, Alison Dawn, Van de Velde, Jozefien D, Burns, Robin, Tikhomirov, Nikita P, Pfordt, Ursula, Clarke, Andrew C, Yant, Levi, Seregin, Alexey P, Vekemans, Xavier, others

(2023) - Molecular Biology and Evolution

No link available
17. SNP Detection in Pinus pinaster Transcriptome and Association with Resistance to Pinewood Nematode

Inês Modesto, Vera Inácio, Polina Novikova, Isabel Carrasquinho, Yves Van de Peer, Célia M. Miguel

(2022/06) - Forests

DOI
16. Plant genetic effects on microbial hubs impact host fitness in repeated field trials

Brachi, Benjamin, Filiault, Daniele, Whitehurst, Hannah, Darme, Paul, Le Gars, Pierre, Le Mentec, Marine, Morton, Timothy C, Kerdaffrec, Envel, Rabanal, Fernando, Anastasio, Alison, others

(2022) - Proceedings of the National Academy of Sciences of the United States of America

No link available
15. Gradual evolution of allopolyploidy in Arabidopsis suecica

Robin Burns, Terezie Mandáková, Joanna Gunis, Luz Mayela Soto-Jiménez, Chang Liu, Martin A. Lysak, Polina Yu. Novikova, Magnus Nordborg

(2021/08) - Nature Ecology & Evolution

DOI
14. Parallel adaptation to climate above the 35th parallel

Robin Burns, Polina Yu. Novikova

(2020/04) - Molecular Ecology

DOI
13. Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus

Polina Yu. Novikova, Rodney Mauricio, Ian G. Brennan, William Booker, Michael Mahony, Paul Doughty, Alan R. Lemmon, Emily Moriarty Lemmon, J. Dale Roberts, Levi Yant, Yves Van de Peer, J. Scott Keogh, Stephen C. Donnellan

(2020/05) - PLOS Genetics

DOI
12. Multiple Independent Recruitment of Sodefrin Precursor-Like Factors in Anuran Sexually Dimorphic Glands

Bossuyt, Franky, Schulte, Lisa M, Maex, Margo, Janssenswillen, Sunita, Novikova, Polina Yu, Biju, SD, Van de Peer, Yves, Matthijs, Severine, Roelants, Kim, Martel, An, others

(2019) - Molecular biology and evolution

No link available
11. Genome of Crucihimalaya himalaica, a close relative of Arabidopsis, shows ecological adaptation to high altitude

Zhang, Ticao, Qiao, Qin, Novikova, Polina Yu, Wang, Qia, Yue, Jipei, Guan, Yanlong, Ming, Shengping, Liu, Tianmeng, De, Ji, Liu, Yixuan, others

(2019) - Proceedings of the National Academy of Sciences

No link available
10. Polyploid Arabidopsis species originated around recent glaciation maxima

Novikova, Polina Yu, Hohmann, Nora, Van de Peer, Yves

(2018) - Current Opinion in Plant Biology

No link available
9. Genome sequencing reveals the origin of the allotetraploid Arabidopsis suecica

Novikova, Polina Yu, Tsuchimatsu, Takashi, Simon, Samson, Nizhynska, Viktoria, Voronin, Viktor, Burns, Robin, Fedorenko, Olga M, Holm, Svante, Säll, Torbjörn, Prat, Elisa, others

(2017) - Molecular Biology and Evolution

No link available
8. On the post-glacial spread of human commensal Arabidopsis thaliana

Lee, Cheng-Ruei, Svardal, Hannes, Farlow, Ashley, Exposito-Alonso, Moises, Ding, Wei, Novikova, Polina, Alonso-Blanco, Carlos, Weigel, Detlef, Nordborg, Magnus

(2017) - Nature Communications

No link available
7. Unstable inheritance of 45S rRNA genes in Arabidopsis thaliana

Rabanal, Fernando A, Nizhynska, Viktoria, Mandáková, Terezie, Novikova, Polina Yu, Lysak, Martin A, Mott, Richard, Nordborg, Magnus

(2017) - G3: Genes, Genomes, Genetics

No link available
6. The footprint of polygenic adaptation on stress-responsive cis-regulatory divergence in the Arabidopsis genus

He, Fei, Arce, Agustin L, Schmitz, Gregor, Koornneef, Maarten, Novikova, Polina, Beyer, Andreas, de Meaux, Juliette

(2016) - Molecular biology and evolution

No link available
5. Epigenomic diversity in a global collection of Arabidopsis thaliana accessions

Kawakatsu, Taiji, Huang, Shao-shan Carol, Jupe, Florian, Sasaki, Eriko, Schmitz, Robert J, Urich, Mark A, Castanon, Rosa, Nery, Joseph R, Barragan, Cesar, He, Yupeng, others

(2016) - Cell

No link available
4. Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism

Novikova, Polina Yu, Hohmann, Nora, Nizhynska, Viktoria, Tsuchimatsu, Takashi, Ali, Jamshaid, Muir, Graham, Guggisberg, Alessia, Paape, Tim, Schmid, Karl, Fedorenko, Olga M, others

(2016) - Nature genetics

No link available
3. 1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

Alonso-Blanco, Carlos, Andrade, Jorge, Becker, Claude, Bemm, Felix, Bergelson, Joy, Borgwardt, Karsten M, Cao, Jun, Chae, Eunyoung, Dezwaan, Todd M, Ding, Wei, others

(2016) - Cell

No link available
2. Exogenous selection rather than cytonuclear incompatibilities shapes asymmetrical fitness of reciprocal Arabidopsis hybrids

Muir, Graham, Ruiz-Duarte, Paola, Hohmann, Nora, Mable, Barbara K, Novikova, Polina, Schmickl, Roswitha, Guggisberg, Alessia, Koch, Marcus A

(2015) - Ecology and evolution

No link available
1. Molecular modeling of the reactive configuration of peroxidized lipid and $α$-tocopherol in the membrane

Novikova, P Yu, Krasilnikov, PM

(2009) - Biophysics

No link available