# README file for Matlab scripts, Chen et al. (2015) A coherent transcriptional feed-forward motif controls auxin-sensitive PIN3 expression for lateral root development.

For reproducing Figure 6c-h, run FLP_PIN3_project_single_parameter_setting.m (Matlab GUI version)
For reproducing Supplementary Figure 10, run FLP_PIN3_project_parameter_screen.m (Matlab GUI version, takes several hours to run)
Supplementary Figures 6-9 can be reproduced by adjusting the parameter settings in default.parms and running FLP_PIN3_project_single_parameter_setting.m with the adjusted parameter file as input.