The queries of ONTO-SPARQL

• The core: the most generic queries that apply to every ontology.
  1. Get all the children of a given term.
  2. Get all the parents of a given term.
  3. Google the ontology: search trough all the content on one or more strings.
  4. Search on the names of the terms with one or more strings.
  5. Get all the neighbor terms of a given term.
  6. Get all the properties, like definition, synonyms, etc., of a given term.
  7. Get a list of all the relation types that are used in the ontology.
  8. Get the long list of all the terms in the ontology.
  9. Get the root term(s) of the ontology.
  10. Get the hierarchy to the root for a given term.
  11. Get the hierarchy above a certain term for a given transitive relation type.
• The queries that apply to CCO
  1. Get a list of all the subnamespaces in CCO.
  2. Get all the proteins that interact with a given protein.
  3. Get all the orthologs of a given protein.
  4. Get the small list of organisms that are in CCO.