Almeida-Silva Fabricio

Almeida-Silva Fabricio - Predoctoral fellow
Joined the group in 2022

22. doubletrouble:an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Fabricio Almeida-Silva, Yves Van de Peer

(2024) -

DOI
21. HybridExpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors

Fabricio Almeida-Silva, Lucas Prost-Boxoen, Yves Van de Peer

(2024) -

DOI
20. Multiomic analysis of genes related to oil traits in legumes provide insights into lipid metabolism and oil richness in soybean

Dayana K. Turquetti-Moraes, Claudio Benicio Cardoso-Silva, Fabricio Almeida-Silva, Thiago M. Venancio

(2024) -

DOI
19. Assessing the quality of comparative genomics data and results with thecogeqcR/Bioconductor package

Fabricio Almeida-Silva, Yves Van de Peer

(2023) -

DOI
18. Discovering and prioritizing candidate resistance genes against soybean pests by integrating GWAS and gene coexpression networks

Fabricio Almeida-Silva, Thiago M. Venancio

(2023) - Gene

DOI
17. Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms

Fabricio Almeida-Silva, Yves Van de Peer

(2023) -

DOI
16. The Soybean Expression Atlas v2: a comprehensive database of over 5000 RNA-seq samples

Fabricio Almeida-Silva, Francisnei Pedrosa-Silva, Thiago M. Venancio

(2023) -

DOI
15. Whole-genome Duplications and the Long-term Evolution of Gene Regulatory Networks in Angiosperms

Fabricio Almeida-Silva, Yves Van de Peer, Michael Purugganan

(2023) - Molecular Biology and Evolution

DOI
14. The Soybean Expression Atlas v2: A comprehensive database of over 5000 RNA‐seq samples

Fabricio Almeida‐Silva, Francisnei Pedrosa‐Silva, Thiago M. Venancio

(2023) - The Plant Journal

DOI
13. Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package

Fabricio Almeida‐Silva, Yves Van de Peer

(2023) - Methods in Ecology and Evolution

DOI
12. BioNERO: an all-in-one R/Bioconductor package for comprehensive and easy biological network reconstruction

Fabricio Almeida-Silva, Thiago M. Venancio

(2022) - Functional & Integrative Genomics

DOI
11. Multiomic Approaches Reveal Hormonal Modulation and Nitrogen Uptake and Assimilation in the Initial Growth of Maize Inoculated with Herbaspirillum seropedicae

Luiz Eduardo Souza da Silva Irineu, Cleiton de Paula Soares, Tatiane Sanches Soares, Felipe Astolpho de Almeida, Fabrício Almeida-Silva, Rajesh Kumar Gazara, Carlos Henrique Salvino Gadelha Meneses, Luciano Pasqualoto Canellas, Vanildo Silveira, Thiago Motta Venancio, Fabio Lopes Olivares

(2022) - Plants

DOI
10. Discovering and prioritizing candidate resistance genes against soybean pests by integrating GWAS and gene coexpression networks

Fabricio Almeida-Silva, Thiago M. Venancio

(2022) -

DOI
9. syntenet: an R/Bioconductor package for the inference and analysis of synteny networks

Fabricio Almeida-Silva, Tao Zhao, Kristian K Ullrich, M Eric Schranz, Yves Van de Peer, Pier Luigi Martelli

(2022) - Bioinformatics

DOI
8. Integration of genome-wide association studies and gene coexpression networks unveils promising soybean resistance genes against five common fungal pathogens

Fabricio Almeida-Silva, Thiago M. Venancio

(2021) -

DOI
7. The state of the art in soybean transcriptomics resources and gene coexpression networks

No contributors listed

(2021) - in silico Plants

DOI
6. Genome-Wide Analysis of the COBRA-Like Gene Family Supports Gene Expansion through Whole-Genome Duplication in Soybean (Glycine max).

No contributors listed

(2021) - Plants (Basel, Switzerland)

DOI
5. cageminer: an R/Bioconductor package to prioritize candidate genes by integrating GWAS and gene coexpression networks

Fabricio Almeida-Silva, Thiago M. Venancio

(2021) -

DOI
4. Pathogenesis-related protein 1 (PR-1) genes in soybean: genome-wide identification, structural analysis and expression profiling under multiple biotic and abiotic stresses

Fabricio Almeida-Silva, Thiago M. Venancio

(2021) -

DOI
3. Integrating omics approaches to discover and prioritize candidate genes involved in oil biosynthesis in soybean

Dayana K. Turquetti-Moraes, Kanhu C. Moharana, Fabricio Almeida-Silva, Francisnei Pedrosa-Silva, Thiago M. Venancio

(2021) -

DOI
2. Systematic analysis of 1,298 RNA‐Seq samples and construction of a comprehensive soybean ( Glycine max ) expression atlas

No contributors listed

(2020) - The Plant Journal

DOI
1. Exploring the complexity of soybean (Glycine max) transcriptional regulation using global gene co-expression networks

No contributors listed

(2020) - Planta

DOI