History and Bug Fixes

Aug 5th 2008

• compatible with Cytoscape 2.6 (thanks to Mike Smoot)

• updated annotations and ontologies

Aug 29th 2007

• updated annotations and ontologies

Jan 17th 2007

• switched back to using default annotations from NCBI instead of from GO website

• GO consortium annotation files can be used as custom annotations

• cosmetic bug fixes

Jan 3rd 2007

• Release BiNGO 2.0
• Cytoscape 2.3 and 2.4 compatible
• Refactored code, faster algorithms
• More organisms
• Evidence code filtering
• Produce custom annotation files with BiNGO
• Default annotations from GO instead of NCBI (REVERSED Jan 17th)
• updated annotations and ontologies

June 22nd 2006

• updated annotations and ontologies

Dec 13th 2005

• singular category nodes (i.e. categories without connections to others) in custom (flat) ontologies were not visualized. Resolved.

Nov 16th 2005

• java version compatibility error 1.5.0 versus 1.4.2 resolved
• bug in underrepresentation analysis : categories represented in the reference set but not in the test set were not tested. Resolved.
• when selecting no correction, B&H correction was performed by default. Resolved

Nov 15th 2005

• Release BiNGO 1.1
• updated annotations and ontologies

April 2005

• Release BiNGO 1.0